Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation[W][OA]
Identifieur interne : 001640 ( Main/Exploration ); précédent : 001639; suivant : 001641Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation[W][OA]
Auteurs : Antonio J. Matas [États-Unis] ; Trevor H. Yeats [États-Unis] ; Gregory J. Buda [États-Unis] ; Yi Zheng [États-Unis] ; Subhasish Chatterjee [États-Unis] ; Takayuki Tohge [Allemagne] ; Lalit Ponnala [États-Unis] ; Avital Adato [Israël] ; Asaph Aharoni [Israël] ; Ruth Stark [États-Unis] ; Alisdair R. Fernie [Allemagne] ; Zhangjun Fei [États-Unis] ; James J. Giovannoni [États-Unis] ; Jocelyn K. C. Rose [États-Unis]Source :
- The Plant Cell [ 1040-4651 ] ; 2011.
Abstract
This study uses laser capture microdissection coupled with pyrosequencing to characterize the cell- and tissue-type transcriptomes of the pericarp of expanding tomato fruits. This provides new insights into the spatial distribution of expression of structural and regulatory genes associated with many metabolic pathways, and a cuticle lining the inner pericarp surface is described.
Url:
DOI: 10.1105/tpc.111.091173
PubMed: 22045915
PubMed Central: 3246317
Affiliations:
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Matas</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant Biology, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Plant Biology, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Yeats, Trevor H" sort="Yeats, Trevor H" uniqKey="Yeats T" first="Trevor H." last="Yeats">Trevor H. Yeats</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant Biology, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Plant Biology, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Buda, Gregory J" sort="Buda, Gregory J" uniqKey="Buda G" first="Gregory J." last="Buda">Gregory J. Buda</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant Biology, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Plant Biology, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Zheng, Yi" sort="Zheng, Yi" uniqKey="Zheng Y" first="Yi" last="Zheng">Yi Zheng</name><affiliation wicri:level="2"><nlm:aff id="aff2">Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Boyce Thompson Institute for Plant Research, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Chatterjee, Subhasish" sort="Chatterjee, Subhasish" uniqKey="Chatterjee S" first="Subhasish" last="Chatterjee">Subhasish Chatterjee</name><affiliation wicri:level="2"><nlm:aff id="aff3">Department of Chemistry, City College of New York, City University of New York Graduate Center and Institute for Macromolecular Assemblies, New York, New York 10031</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Chemistry, City College of New York, City University of New York Graduate Center and Institute for Macromolecular Assemblies, New York</wicri:cityArea></affiliation></author><author><name sortKey="Tohge, Takayuki" sort="Tohge, Takayuki" uniqKey="Tohge T" first="Takayuki" last="Tohge">Takayuki Tohge</name><affiliation wicri:level="1"><nlm:aff id="aff4">Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm</wicri:regionArea><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion></affiliation></author><author><name sortKey="Ponnala, Lalit" sort="Ponnala, Lalit" uniqKey="Ponnala L" first="Lalit" last="Ponnala">Lalit Ponnala</name><affiliation wicri:level="2"><nlm:aff id="aff5">Computational Biology Service Unit, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Computational Biology Service Unit, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Adato, Avital" sort="Adato, Avital" uniqKey="Adato A" first="Avital" last="Adato">Avital Adato</name><affiliation wicri:level="1"><nlm:aff id="aff6">Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100</wicri:regionArea><wicri:noRegion>Rehovot 76100</wicri:noRegion></affiliation></author><author><name sortKey="Aharoni, Asaph" sort="Aharoni, Asaph" uniqKey="Aharoni A" first="Asaph" last="Aharoni">Asaph Aharoni</name><affiliation wicri:level="1"><nlm:aff id="aff6">Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100, Israel</nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea>Department of Plant Sciences, Weizmann Institute of Science, Rehovot 76100</wicri:regionArea><wicri:noRegion>Rehovot 76100</wicri:noRegion></affiliation></author><author><name sortKey="Stark, Ruth" sort="Stark, Ruth" uniqKey="Stark R" first="Ruth" last="Stark">Ruth Stark</name><affiliation wicri:level="2"><nlm:aff id="aff3">Department of Chemistry, City College of New York, City University of New York Graduate Center and Institute for Macromolecular Assemblies, New York, New York 10031</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Chemistry, City College of New York, City University of New York Graduate Center and Institute for Macromolecular Assemblies, New York</wicri:cityArea></affiliation></author><author><name sortKey="Fernie, Alisdair R" sort="Fernie, Alisdair R" uniqKey="Fernie A" first="Alisdair R." last="Fernie">Alisdair R. Fernie</name><affiliation wicri:level="1"><nlm:aff id="aff4">Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm</wicri:regionArea><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion><wicri:noRegion>14476 Potsdam-Golm</wicri:noRegion></affiliation></author><author><name sortKey="Fei, Zhangjun" sort="Fei, Zhangjun" uniqKey="Fei Z" first="Zhangjun" last="Fei">Zhangjun Fei</name><affiliation wicri:level="2"><nlm:aff id="aff2">Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Boyce Thompson Institute for Plant Research, Cornell University, Ithaca</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="aff7">U.S. Department of Agriculture–Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>U.S. Department of Agriculture–Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Giovannoni, James J" sort="Giovannoni, James J" uniqKey="Giovannoni J" first="James J." last="Giovannoni">James J. Giovannoni</name><affiliation wicri:level="2"><nlm:aff id="aff2">Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Boyce Thompson Institute for Plant Research, Cornell University, Ithaca</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="aff7">U.S. Department of Agriculture–Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>U.S. Department of Agriculture–Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca</wicri:cityArea></affiliation></author><author><name sortKey="Rose, Jocelyn K C" sort="Rose, Jocelyn K C" uniqKey="Rose J" first="Jocelyn K. C." last="Rose">Jocelyn K. C. Rose</name><affiliation wicri:level="2"><nlm:aff id="aff1">Department of Plant Biology, Cornell University, Ithaca, New York 14853</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Plant Biology, Cornell University, Ithaca</wicri:cityArea></affiliation></author></analytic><series><title level="j">The Plant Cell</title><idno type="ISSN">1040-4651</idno><idno type="eISSN">1532-298X</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>This study uses laser capture microdissection coupled with pyrosequencing to characterize the cell- and tissue-type transcriptomes of the pericarp of expanding tomato fruits. This provides new insights into the spatial distribution of expression of structural and regulatory genes associated with many metabolic pathways, and a cuticle lining the inner pericarp surface is described.</p></div></front></TEI><affiliations><list><country><li>Allemagne</li><li>Israël</li><li>États-Unis</li></country><region><li>État de New York</li></region></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Matas, Antonio J" sort="Matas, Antonio J" uniqKey="Matas A" first="Antonio J." last="Matas">Antonio J. Matas</name></region><name sortKey="Buda, Gregory J" sort="Buda, Gregory J" uniqKey="Buda G" first="Gregory J." last="Buda">Gregory J. Buda</name><name sortKey="Chatterjee, Subhasish" sort="Chatterjee, Subhasish" uniqKey="Chatterjee S" first="Subhasish" last="Chatterjee">Subhasish Chatterjee</name><name sortKey="Fei, Zhangjun" sort="Fei, Zhangjun" uniqKey="Fei Z" first="Zhangjun" last="Fei">Zhangjun Fei</name><name sortKey="Fei, Zhangjun" sort="Fei, Zhangjun" uniqKey="Fei Z" first="Zhangjun" last="Fei">Zhangjun Fei</name><name sortKey="Giovannoni, James J" sort="Giovannoni, James J" uniqKey="Giovannoni J" first="James J." last="Giovannoni">James J. Giovannoni</name><name sortKey="Giovannoni, James J" sort="Giovannoni, James J" uniqKey="Giovannoni J" first="James J." last="Giovannoni">James J. Giovannoni</name><name sortKey="Ponnala, Lalit" sort="Ponnala, Lalit" uniqKey="Ponnala L" first="Lalit" last="Ponnala">Lalit Ponnala</name><name sortKey="Rose, Jocelyn K C" sort="Rose, Jocelyn K C" uniqKey="Rose J" first="Jocelyn K. C." last="Rose">Jocelyn K. C. Rose</name><name sortKey="Stark, Ruth" sort="Stark, Ruth" uniqKey="Stark R" first="Ruth" last="Stark">Ruth Stark</name><name sortKey="Yeats, Trevor H" sort="Yeats, Trevor H" uniqKey="Yeats T" first="Trevor H." last="Yeats">Trevor H. Yeats</name><name sortKey="Zheng, Yi" sort="Zheng, Yi" uniqKey="Zheng Y" first="Yi" last="Zheng">Yi Zheng</name></country><country name="Allemagne"><noRegion><name sortKey="Tohge, Takayuki" sort="Tohge, Takayuki" uniqKey="Tohge T" first="Takayuki" last="Tohge">Takayuki Tohge</name></noRegion><name sortKey="Fernie, Alisdair R" sort="Fernie, Alisdair R" uniqKey="Fernie A" first="Alisdair R." last="Fernie">Alisdair R. Fernie</name></country><country name="Israël"><noRegion><name sortKey="Adato, Avital" sort="Adato, Avital" uniqKey="Adato A" first="Avital" last="Adato">Avital Adato</name></noRegion><name sortKey="Aharoni, Asaph" sort="Aharoni, Asaph" uniqKey="Aharoni A" first="Asaph" last="Aharoni">Asaph Aharoni</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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